Protein ZmTRAF12
ZmTRAF12 is a protein in the TRAF family.
Information
Coreg Name: ZmTRAF12
Species: Maize
Coreg Family: TRAF
Gene Name(Synonym):
Uniprot ID: A0A1D6PDQ1
Subgenome: 1

Protein ZmTRAF12

ZmTRAF12 is a protein in the TRAF family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.

Overview of domains present in v5 transcripts
PF00651PF00917
Zm00001eb035900_T001
Zm00001eb035890_T001
Zm00001eb035890_T002

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d031549DAPseq no logo sequence fimo position
Zm00001d031549DAPseq no logo sequence fimo position
Zm00001d031549ChIPseq no logo sequence fimo position
Zm00001d031549PChIPseq no logo sequence fimo position

Interactions where ZmTRAF12 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmTRAF12 is the target  
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There are 21 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb035900_T001 from maize genome v5

Amino Acid Sequence
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MSDSTFNSCFTHQFKLNYEDTEKVAIGYSVSSENILAGGHLWRIGCYPRGDHGKENKGECLSMFLYHESESKDAKAIFEA
FVMDKEGTVSSSSHQSRVLHVFAPKGSDGYGWPSFVERSVLKSRYVTNDGSFVIVGAVQVVQEEDPLDLPPSNIGSHLGL
LLDSTAGSDVTFVVDGERFAAHRAVLAARSPVFNAQLFGSMADATMTSIPLHGISAATLRAMLRFMYTDACPEEADDSDL
LAAADRFDLDRLKLLCARKLWNNVTEDTVAGTLICAETYNCPQLKRKCVGFFGEGKDFKTRAVLTDDFARLALQFPSILD
DLWVKAGA

MSDSTFNSCFTHQFKLNYEDTEKVAIGYSVSSENILAGGHLWRIGCYPRGDHGKENKGECLSMFLYHESESKDAKAIFEA
FVMDKEGTVSSSSHQSRVLHVFAPKGSDGYGWPSFVERSVLKSRYVTNDGSFVIVGAVQVVQEEDPLDLPPSNIGSHLGL
LLDSTAGSDVTFVVDGERFAAHRAVLAARSPVFNAQLFGSMADATMTSIPLHGISAATLRAMLRFMYTDACPEEADDSDL
LAAADRFDLDRLKLLCARKLWNNVTEDTVAGTLICAETYNCPQLKRKCVGFFGEGKDFKTRAVLTDDFARLALQFPSILD
DLWVKAGA

MSDSTFNSCFTHQFKLNYEDTEKVAIGYSVSSENILAGGHLWRIGCYPRGDHGKENKGECLSMFLYHESESKDAKAIFEA
FVMDKEGTVSSSSHQSRVLHVFAPKGSDGYGWPSFVERSVLKSRYVTNDGSFVIVGAVQVVQEEDPLDLPPSNIGSHLGL
LLDSTAGSDVTFVVDGERFAAHRAVLAARSPVFNAQLFGSMADATMTSIPLHGISAATLRAMLRFMYTDACPEEADDSDL
LAAADRFDLDRLKLLCARKLWNNVTEDTVAGTLICAETYNCPQLKRKCVGFFGEGKDFKTRAVLTDDFARLALQFPSILD
DLWVKAGA

MSDSTFNSCFTHQFKLNYEDTEKVAIGYSVSSENILAGGHLWRIGCYPRGDHGKENKGECLSMFLYHESESKDAKAIFEA
FVMDKEGTVSSSSHQSRVLHVFAPKGSDGYGWPSFVERSVLKSRYVTNDGSFVIVGAVQVVQEEDPLDLPPSNIGSHLGL
LLDSTAGSDVTFVVDGERFAAHRAVLAARSPVFNAQLFGSMADATMTSIPLHGISAATLRAMLRFMYTDACPEEADDSDL
LAAADRFDLDRLKLLCARKLWNNVTEDTVAGTLICAETYNCPQLKRKCVGFFGEGKDFKTRAVLTDDFARLALQFPSILD
DLWVKAGA

MSDSTFNSCFTHQFKLNYEDTEKVAIGYSVSSENILAGGHLWRIGCYPRGDHGKENKGECLSMFLYHESESKDAKAIFEA
FVMDKEGTVSSSSHQSRVLHVFAPKGSDGYGWPSFVERSVLKSRYVTNDGSFVIVGAVQVVQEEDPLDLPPSNIGSHLGL
LLDSTAGSDVTFVVDGERFAAHRAVLAARSPVFNAQLFGSMADATMTSIPLHGISAATLRAMLRFMYTDACPEEADDSDL
LAAADRFDLDRLKLLCARKLWNNVTEDTVAGTLICAETYNCPQLKRKCVGFFGEGKDFKTRAVLTDDFARLALQFPSILD
DLWVKAGA

MSDSTFNSCFTHQFKLNYEDTEKVAIGYSVSSENILAGGHLWRIGCYPRGDHGKENKGECLSMFLYHESESKDAKAIFEA
FVMDKEGTVSSSSHQSRVLHVFAPKGSDGYGWPSFVERSVLKSRYVTNDGSFVIVGAVQVVQEEDPLDLPPSNIGSHLGL
LLDSTAGSDVTFVVDGERFAAHRAVLAARSPVFNAQLFGSMADATMTSIPLHGISAATLRAMLRFMYTDACPEEADDSDL
LAAADRFDLDRLKLLCARKLWNNVTEDTVAGTLICAETYNCPQLKRKCVGFFGEGKDFKTRAVLTDDFARLALQFPSILD
DLWVKAGA

MSDSTFNSCFTHQFKLNYEDTEKVAIGYSVSSENILAGGHLWRIGCYPRGDHGKENKGECLSMFLYHESESKDAKAIFEA
FVMDKEGTVSSSSHQSRVLHVFAPKGSDGYGWPSFVERSVLKSRYVTNDGSFVIVGAVQVVQEEDPLDLPPSNIGSHLGL
LLDSTAGSDVTFVVDGERFAAHRAVLAARSPVFNAQLFGSMADATMTSIPLHGISAATLRAMLRFMYTDACPEEADDSDL
LAAADRFDLDRLKLLCARKLWNNVTEDTVAGTLICAETYNCPQLKRKCVGFFGEGKDFKTRAVLTDDFARLALQFPSILD
DLWVKAGA

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF00917
PF00651
PF00651
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Nucleotide Sequence
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ATGAGTGACAGCACGTTCAATTCTT...

GRMZM2G040509_T01 from maize genome v3


Related TFome: pUT5736

Amino Acid Sequence
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MIYNSKRRVAPKGSGGIDSFGWSSFVKRSVLESLYVTNDGWFVVVGAVKVVQEEDPLDLPPSNIGSHLGLLLDSTAGSDV
TFVVDGERFAAHRAMLAARSPVFKAQLLGSMADATMSSIPLHGISAATFRAMLRFMYTDACPEEADDSDSDSSPGEMFHD
LLAAADRFDLDRLKLLCARKLWNNVSEDTVADTLICAETYNCPQLKRKCLGFFGEGKDFKTKAVLTDGFARLAMEFPWIL
DELREKAGA

Nucleotide Sequence
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ACCTCGAGTTACCGTATGCGATGCT...

GRMZM2G337139_T01 from maize genome v3


Related TFome: pUT5979

Amino Acid Sequence
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MSDSTFNSCFTHQFKLNYEDTEKVAIGYSVSSENILAGGHLWRIGCYPRGDHGKENKGECLSMFLYHESESKDAKAIFEA
FVMDKEGTVSSSSHQSRVLHVFAPKGSDGYGWPSFVERSVLKSRYVTNDGSFVIVGAVQVVQEEDPLDLPPSNIGSHLGL
LLDSTAGSDVTFVVDGERFAAHRAVLAARSPVFNAQLFGSMADATMTSIPLHGISAATLRAMLRFMYTDACPEEADDSDL
LAAADRFDLDRLKLLCARKLWNNVTEDTVAGTLICAETYNCPQLKRKCVGFFGEGKDFKTRAVLTDDFARLALQFPSILD
DLWVKAGA

Nucleotide Sequence
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ATGAGTGACAGCACGTTCAATTCTT...

Zm00001d031549_T001 from maize genome v4

Amino Acid Sequence
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MLAARSPVFKAQLLGSMADATMSSIPLHGISAATFRAMLRFMYTDACPEEAPGEMFHDLLAAADRFDLDRLKLLCARKLW
NNVSEDTVADTLICAETYNCPQLKRKCLGFFGEGKDFKTKAVLTDGFARLAMEFPWILDELREKAGA

Nucleotide Sequence
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GCAGTCAAGGTTGTGCAGGAGGAGG...

Zm00001d031549_T002 from maize genome v4

Amino Acid Sequence
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MSDSTFNSCFTHQFKLNYEDTEKVAIGYSVSSENILAGGHLWRIGCYPRGDHGKENKGECLSMFLYHESESKDAKAIFEA
FVMDKEGTVSSSSHQSRVLHVFAPKGSDGYGWPSFVERSVLKSRYVTNDGSFVIVGAVQVVQEEDPLDLPPSNIGSHLGL
LLDSTAGSDVTFVVDGERFAAHRAVLAARSPVFNAQLFGSMADATMTSIPLHGISAATLRAMLRFMYTDACPEEADDSDL
LAAADRFDLDRLKLLCARKLWNNVTEDTVAVKVVQEEDPLDLPPSNIGSHLGLLLDSTAGSDVTFVVDGERFAAHRAMLA
ARSPVFKAQLLGSMADATMSSIPLHGISAATFRAMLRFMYTDACPEEADDSDSDSSPGEMFHDLLAAADRFDLDRLKLLC
ARKLWNNVSEDTVADTLICAETYNCPQLKRKCLGFFGEGKDFKTKAVLTDGFARLAMEFPWILDELREKAGA

Nucleotide Sequence
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ATGAGTGACAGCACGTTCAATTCTT...

Zm00001eb035890_T001 from maize genome v5

Amino Acid Sequence
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MIYNSKRRVAPKGSGGIDSFGWSSFVKRSVLESLYVTNDGWFVVVGAVKVVQEEDPLDLPPSNIGSHLGLLLDSTAGSDV
TFVVDGERFAAHRAMLAARSPVFKAQLLGSMADATMSSIPLHGISAATFRAMLRFMYTDACPEEADDSDSDSSPGEMFHD
LLAAADRFDLDRLKLLCARKLWNNVSEDTVADTLICAETYNCPQLKRKCLGFFGEGKDFKTKAVLTDGFARLAMEFPWIL
DELREKAGA

Nucleotide Sequence
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GTGGGCGGTTGGATTCGTGCTACGT...

Zm00001eb035890_T002 from maize genome v5

Amino Acid Sequence
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MIYNSKRRVAPKGSGGIDSFGWSSFVKRSVLESLYVTNDGWFVVVGAVKVVQEEDPLDLPPSNIGSHLGLLLDSTAGSDV
TFVVDGERFAAHRAMLAARSPVFKAQLLGSMADATMSSIPLHGISAATFRAMLRFMYTDACPEEADDSDSDSSPGEMFHD
LLAAADRFDLDRLKLLCARKLWNNVSEDTVADTLICAETYNCPQLKRKCLGFFGEGKDFKTKAVLTDGFARLAMEFPWIL
DELREKAGA

Nucleotide Sequence
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GGTTCTTGTGGATGATATATAACTC...


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